Novel conopeptides of the I-superfamily occur in several clades of cone snails

The I-superfamily of conotoxins represents a new class of peptides in the venom of some Conus species. These toxins are characterized by four disulfide bridges and inhibit or modify ion channels of nerve cells. When testing venoms from 11 Conus species for a functional characterization, blocking activity on potassium channels (like Kv1.1 and Kv1.3 channels, but not Kv1.2 channels) was detected in the venom of Conus capitaneus, Conus miles, Conus vexillum and Conus virgo. Analysis at the cDNA level of these venoms using primers designed according to the amino acid sequence of a potassium channel blocking toxin (ViTx) from C. virgo confirmed the presence of structurally homologous peptides in these venoms. Moreover, peptides belonging to the I-superfamily, but with divergent amino acid sequences, were found in Conus striatus and Conus imperialis. In all cases, the sequences of the precursors' prepro-regions exhibited high conservation, whereas the sequences of the mature peptides ranged from almost identical to highly divergent between species. We then performed phylogenetic analyses of new and published mitochondrial 16S rDNA sequences representing 104 haplotypes from these and numerous other Conus species, using Bayesian, maximum-likelihood, maximum-parsimony and neighbor-joining methods of inference. Cone snails known to possess I-superfamily toxins were assigned to five different major clades in all of the resulting gene trees. Moreover, I-superfamily conopeptides were detected both in vermivorous and piscivorous species of Conus, thus demonstrating the widespread presence of such toxins in this speciose genus beyond evolutionary and ecological groups

Background reionization history from omniscopes

The measurements of the 21-cm brightness temperature fluctuations from the neutral hydrogen at the Epoch of Reionization (EoR) should inaugurate the next generation of cosmological observables. In this respect, many works have concentrated on the disambiguation of the cosmological signals from the dominant reionization foregrounds. However, even after perfect foregrounds removal, our ignorance on the background reionization history can significantly affect the cosmological parameter estimation. In particular, the interdependence between the hydrogen ionized fraction, the baryon density and the optical depth to the redshift of observation induce nontrivial degeneracies between the cosmological parameters that have not been considered so far. Using a simple, but consistent reionization model, we revisit their expected constraints for a futuristic giant 21-cm omniscope by using for the first time Markov Chain Monte Carlo (MCMC) methods on multiredshift full sky simulated data. Our results agree well with the usual Fisher matrix analysis on the three-dimensional flat sky power spectrum but only when the above-mentioned degeneracies are kept under control. In the opposite situation, Fisher results can be inaccurate. We show that these conditions can be fulfilled by combining cosmic microwave background measurements with multiple observation redshifts probing the beginning of EoR. This allows a precise reconstruction of the total optical depth, reionization duration and maximal spin temperature. Finally, we discuss the robustness of these results in presence of unresolved ionizing sources. Although most of the standard cosmological parameters remain weakly affected, we find a significant degradation of the background reionization parameter estimation in presence of nuisance ionizing sources.Comment: 22 pages, 18 figures, uses RevTex. References added, matches published versio

The Upgrade of the CMS RPC System during the First LHC Long Shutdown

The CMS muon system includes in both the barrel and endcap region Resistive Plate Chambers (RPC). They mainly serve as trigger detectors and also improve the reconstruction of muon parameters. Over the years, the instantaneous luminosity of the Large Hadron Collider gradually increases. During the LHC Phase 1 (~first 10 years of operation) an ultimate luminosity is expected above its design value of 10^34/cm^2/s at 14 TeV. To prepare the machine and also the experiments for this, two long shutdown periods are scheduled for 2013-2014 and 2018-2019. The CMS Collaboration is planning several detector upgrades during these long shutdowns. In particular, the muon detection system should be able to maintain a low-pT threshold for an efficient Level-1 Muon Trigger at high particle rates. One of the measures to ensure this, is to extend the present RPC system with the addition of a 4th layer in both endcap regions. During the first long shutdown, these two new stations will be equipped in the region |eta|<1.6 with 144 High Pressure Laminate (HPL) double-gap RPCs operating in avalanche mode, with a similar design as the existing CMS endcap chambers. Here, we present the upgrade plans for the CMS RPC system for the fist long shutdown, including trigger simulation studies for the extended system, and details on the new HPL production, the chamber assembly and the quality control procedures.Comment: 9 pages, 6 figures, presented by M.Tytgat at the XI workshop on Resistive Plate Chambers and Related Detectors (RPC2012), INFN - Laboratori Nazionali di Frascati, February 5-10, 201

Production of Polarized Vector Mesons off Nuclei

Using the light-cone QCD dipole formalism we investigate manifestations of color transparency (CT) and coherence length (CL) effects in electroproduction of longitudinally (L) and transversally (T) polarized vector mesons. Motivated by forthcoming data from the HERMES experiment we predict both the A and Q^2 dependence of the L/T- ratios, for rho^0 mesons produced coherently and incoherently off nuclei. For an incoherent reaction the CT and CL effects add up and result in a monotonic A dependence of the L/T-ratio at different values of Q^2. On the contrary, for a coherent process the contraction of the CL with Q^2 causes an effect opposite to that of CT and we expect quite a nontrivial A dependence, especially at Q^2 >> m_V^2.Comment: Revtex 24 pages and 14 figure

Safety and feasibility of indocyanine green fluorescence angiography in pediatric gastrointestinal surgery:A systematic review

Background: Although ICG-FA may be valuable in assessing anastomotic perfusion, reliable data on its use in pediatric gastrointestinal surgery is lacking. This systematic review analyzes whether ICG is useful for intestinal perfusion assessment in pediatric gastrointestinal surgery and safe to use in neonates. Methods: Systematic searches of PubMed, EMBASE &amp; MEDLINE and CENTRAL were performed (last conducted December 6, 2021). The main inclusion criteria were (1) use of ICG for intestinal perfusion assessment and (2) use of ICG in young infants. Exclusion criteria were lack of an English or Dutch full-text and MINORS quality score &lt;60%. Data was presented in overview tables. The usefulness in pediatric gastrointestinal surgery was assessed by surgical outcome. Safety of ICG in neonates was assessed by complication or adverse event occurrence. Results: Regarding intestinal perfusion assessment, four studies were included, reporting 45 patients (median age 1.5 years). ICG was considered useful for anastomotic blood flow evaluation and intraoperative determination of resection length. Regarding ICG safety in neonates, eight studies were included, reporting 46 infants (median age 24.9 days), of which 18 neonates. All but one studies reported the absence of complications or adverse events. Two studies reported subcutaneous dye retention, which fully disappeared within two weeks. Conclusion: Although the number of available studies is small, ICG might be useful for intraoperative intestinal perfusion assessment, perhaps even more than conventional clinical assessment. Furthermore, its safety profile looks promising in neonates. Larger prospective studies are necessary to confirm these assumptions and seem warranted given the safety profile. Levels of evidence: Since this is a systematic review, a Level of Evidence for clinical studies cannot be determined for this manuscript.</p

A Novel Technique for Risk Calculation of Anastomotic Leakage after Thoracoscopic Repair for Esophageal Atresia with Distal Fistula

Purpose: This study was designed to determine the risk of anastomotic leakage after thoracoscopic repair for esophageal atresia by digitally measuring the length of the proximal esophagus and distance of carina to proximal esophagus. Methods: With the use of Picture Archiving and Communication System (PACS), the length of the proximal esophagus from the top of the first thoracic vertebra was measured on the preoperative chest x-ray, as well as the distance from the carina to the proximal esophagus. The chest x-rays of 27 neonates, born with esophageal atresia with distal fistula, were examined. Furthermore, the tapes from the procedures were reviewed. Statistical analysis was performed with the t test for equality of means by using SPSS® 12.0.1 for Windows. Results: Both groups were comparable, and there was a statistical significant difference in both length of the proximal esophagus (p<0.023) and distance of carina to proximal esophagus (p<0.022) in patients who did and did not leak postoperatively. There seems to be a tendency toward a shorter proximal esophagus in recent years that was not obvious earlier. Conclusions: The digital measurement of the length of the proximal esophagus (M<7 mm) and distance of carina to proximal esophagus (M<13.5 mm) with the use of PACS gives a good risk calculation for postoperative leakage

Performance of Glass Resistive Plate Chambers for a high granularity semi-digital calorimeter

A new design of highly granular hadronic calorimeter using Glass Resistive Plate Chambers (GRPCs) with embedded electronics has been proposed for the future International Linear Collider (ILC) experiments. It features a 2-bit threshold semi-digital read-out. Several GRPC prototypes with their electronics have been successfully built and tested in pion beams. The design of these detectors is presented along with the test results on efficiency, pad multiplicity, stability and reproducibility.Comment: 16 pages, 15 figure

Particle Dark Matter Candidates

I give a short overview on some of the favorite particle Cold Dark Matter candidates today, focusing on those having detectable interactions: the axion, the KK-photon in Universal Extra Dimensions, the heavy photon in Little Higgs and the neutralino in Supersymmetry. The neutralino is still the most popular, and today is available in different flavours: SUGRA, nuSUGRA, sub-GUT, Mirage mediation, NMSSM, effective MSSM, scenarios with CP violation. Some of these scenarios are already at the level of present sensitivities for direct DM searches.Comment: 7 pages, 4 figures, 3 references added. Contribution to the proceedings of the TAUP 07 conference, Sep. 11-15, Sendai, Japa